Publications

Our customers have used BaseClear services for almost 20 years and used their results in numerous publications, abstracts and presentations.

You can read some publications below. Acknowlegde BaseClear on your publication or abstract using our DNA sequencing or NGS sequencing services and receive a free cake when sending us a copy for this webpage! info@baseclear.nl

Next Generation Sequencing (Illumina)

The response to copper stress in Streptomyces lividans extends beyond genes under the direct control of a Copper sensitive operon Repressor protein (CsoR) Srivatsa Dwarakanath*, Amanda K. Chaplin*, Michael A. Hough*, Sebastien Rigali*, Erik Vijgenboom* and Jonathan A. R. Worrall1,*

Genome sequence of the fungus Glarea lozoyensis: the first genome sequence of a species from the Helotiaceae family, Youssar, L. 2012 

Primitive Duplicate Hox Clusters in the European Eel's Genome, Henkel, C.V. 2012

The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina Next Generation Sequencing.
 

DNA sequencing

Microbial Communities and Electrochemical Performance of
Titanium-Based Anodic Electrodes in a Microbial
Fuel Cell. Urania Michaelidou,1 et al

Detection and characterization of twochimpanzee polyomavirus genotypes from different subspeciesVirol J 2010 Deuzing et al

Molecular Analysis of a Novel Simian Virus 40 (SV40) Type in Rhesus Macaques and Evidence for Double Infections with the Classical SV40 Type †, J Clin Microbiol 2011 Fagrouch, et al

A  new  group  of  exo-acting  family  28  glycoside  hydrolases  of Aspergillus niger that are involved in pectin degradation, BiochemJ2006Jul5 Martens-Uzunova-et al

Diversity of phototrophic bacteria in microbial mats from Arctic hot springs (Greenland), EnvironMicrobiol, 2007Jan 9 Roeselers et al

On the reproducibility of microcosm experiments different community composition in parallel phototrophic biofilm microcosms, FEMS MicrobiolEcol 2006Nov, Roeselers et al

Heterotrophic Pioneers Facilitate Phototrophic Biofilm Development,
MicrobEcol 2007Mrt18 epub, Roeselers et al

Molecular Evolution of a Tandemly Repeated trnF(GAA) Gene in the Chloroplast Genomes of Microseris (Asteraceae) and the Use of Structural Mutations in Phylogenetic Analyses, MolBiolEvol 1999Okt, Vijverberg et al

 

Bioinformatica (SSPACE)

A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from Madagascar
George H. Perry,1* Darryl Reeves,

 

De Novo Sequencing on the Ion Torrent PGM
Mate-pair library data improves genome assembly

 

Scaffolding pre assembled contigs using SSPACE:Boetzer, M. et. al. 2011


Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology, Takeuchi, T. et. al. 2011 

Using the Acropora digitifera genome to understand coral responses to environmental change, Nature Volume:476, Pages:320–323, 2011

The Monarch Butterfly Genome Yields Insights into Long-Distance Migration, Cell Volume 147, Issue 5, 1171-1185, 23 November 2011

Use of Low-Coverage, Large-Insert, Short-Read Data for Rapid and Accurate Generation of Enhanced-Quality Draft Pseudomonas Genome Sequences, 2011 O'brien et.al.

Genome-Enabled Insights into Legume Biology, Young, D. et.al 2011


Genome Sequences of Three Tunicamycin-Producing Streptomyces Strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396, James R. Doroghazi et al., J.Bacteriol 2011

A Proteomic Survey of Nonribosomal Peptide and Polyketide Biosynthesis in Actinobacteria, J.Proteome Res, 2012, 11 (1), pp 85-94

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