Our innovative pathogen detection method is comprehensive, fast and able to detect contaminants at low abundance levels. This rapid method is assembly-free and uses specific pathogen databases and downstream analyses to check for low abundant potentially pathogenic species. Our pipeline can be used on metagenomic sequencing data from an wide array of samples.
Read our blog on validation steps
Advantages of our pathogen detection pipeline;
- Dedicated databases covering pathogenic genera from different domains
- The database is customizable according to the client needs
- False-positive adjustment reduces the number of low abundance false positives
- Fast detection of contamination
- Detection of low abundant species
- User friendly output table
- Additional functional analysis to investigate the pathogenicity of the detected species
Altogether, our integrated metagenome pipeline offers a reliable approach to quickly detect pathogens. This method can replace more laborious and less precise traditional methods of pathogen detection. Get in touch with our experts to discuss the possibilities!