With our pathogen detection pipeline we offer an efficient, fast and accurate solution to detect pathogens in a variety of sample types. Our pipeline includes false-positive adjusted species-level taxonomic analysis by shotgun metagenomics sequencing. With this pipeline we can quickly scan for pathogens in metagenome data. We detect both known and unknown pathogens. Our state-of-the-art tools deliver way to better distinguish low abundant pathogens from false positives.
Our innovative pathogen detection method is comprehensive, fast and able to detect contaminants at low abundance levels (up to 0.01) in a variety of sample type. This rapid method is assembly-free and uses specific pathogen databases and downstream analyses to check for low abundant potentially pathogenic species. Our pipeline can be used on metagenomic sequencing data from an wide array of samples.
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Altogether, our integrated metagenome pipeline offers a reliable approach to quickly detect pathogens. This method can replace more laborious and less precise traditional methods of pathogen detection.
