At BaseClear, scientific research is at the heart of everything we do. We actively contribute to the global microbiome and genomics knowledge base through peer-reviewed publications, collaborative research projects, and innovative studies.
Our team of scientists and bioinformaticians work closely with academic institutions, industry partners, and clients to advance microbiome science and its applications in human health, food safety, animal well-being, and biotechnology.
Below is a selection of publications that reflect our scientific involvement, both as co-authors and as a trusted contract research organization (CRO). These contributions highlight the depth of our expertise and our commitment to scientific excellence, transparency, and innovation.
2019
- Gommers, L. M. M. et al. (2019). Low gut microbiota diversity and dietary magnesium intake are associated with the development of PPI‐induced hypomagnesemia. The FASEB Journal, 33(10), 11235–11246.
Read the study - Keijser, B. J. F. et al. (2019). Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome. BMC Genomics, 20(1).
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2021
- Andralojc, K. M. et al. (2021). Novel high-resolution targeted sequencing of the cervicovaginal microbiome. BMC Biology, 19(1).
Read the study - Johnstone, N. et al. (2021). Anxiolytic effects of a galacto-oligosaccharides prebiotic in healthy females (18–25 years). Scientific Reports, 11(1).
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2022
- Abera, S. et al. (2022). Defining the core microbiome of Sorghum bicolor in agricultural soils. FEMS Microbiology Ecology, 98(12).
Read the study - Oyserman, B. O. et al. (2022). Disentangling the genetic basis of rhizosphere microbiome assembly in tomato. Nature Communications, 13(1).
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2023
- Deyaert, S. et al. (2023). Development of a reproducible small intestinal microbiota model and integration into SHIME®. Frontiers in Microbiology, 13.
Read the study - Klaassens, E. S. et al. (2023). Topical gel with bovine antibodies reduces Staphylococci on canine skin microbiome. bioRxiv.
Read the study - Melsaether, C. et al. (2023). Probiotic seeding in infants: Effects on microbiota and GI symptoms. Nutrients, 15(18), 4000.
Read the study - Van Belkum, A. et al. (2023). Being friendly to the skin microbiome: Experimental assessment. Frontiers in Microbiomes, 1.
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2024
- Andréasson, K. et al. (2024). Treatment for rheumatoid arthritis associated with microbiota changes. ACR Open Rheumatology, 6(7), 421–427.
Read the study - Carlino, N. et al. (2024). Unexplored microbial diversity from 2,500 food metagenomes linked to the human microbiome. Cell, 187(20), 5775–5795.e15.
Read the study - Klaassens, E. S. et al. (2024). Protein modification in infant formula affects gut microbiota. Microbiome Research Reports, 3(3).
Read the study - Willems, A. et al. (2024). Self-initiated dietary adjustments alter microbiota abundances. Nutrients, 16(20), 3544–3544.
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2025
- Pirovano, W. et al. (2025). Improved key microbial biomarker discovery using ensemble statistical methods. Advanced Gut & Microbiome Research.
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