Analysis of microbial communities in clinical and environmental samples
Reliable microbial testing is critical to maintaining product quality, patient safety, and regulatory compliance. We provide comprehensive sterility and microbial characterization services designed to support pharmaceutical, biotechnology, cell and gene therapy, and medical device manufacturers throughout product development and commercial manufacturing. Our team combines advanced molecular technologies with proven microbiological methods to deliver rapid, accurate, and actionable results that help you make confident decisions.
We perform comprehensive sterility testing according to applicable regulatory standards to verify the absence of contaminating microorganisms in clean rooms, pharmaceutical products, biologics, medical devices, and other sterile materials.
Whether you require routine sterility testing, contamination investigation support, microbial identification, or advanced molecular analysis, our laboratory services are designed to help you meet regulatory requirements while maintaining the highest standards of product safety and quality.
Harnessing cutting-edge analytical technologies to deliver precise, actionable insights that drive confident decision-making.
Fast, reliable results without compromising accuracy, so your projects keep moving forward on schedule.
Our team of seasoned microbiology and molecular biology professionals ensures expert analysis and interpretation for every sample.
Testing programs fully aligned with industry regulations, giving you confidence in compliance and audit readiness.
We prioritize unmatched quality, meticulous accuracy, and complete data integrity in every test we perform
ISO17025
Publications
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BaseClear offers microbiome analysis services including taxonomic profiling, functional metagenomics, transcriptomics (RNA-seq and metatranscriptomics), microbial biomarker discovery, and microbiome-friendly testing. Depending on the research question, we can apply amplicon sequencing, shotgun metagenomics, or transcriptomics workflows combined with advanced bioinformatics analysis to generate actionable biological insights.
Amplicon sequencing targets specific genetic markers such as the 16S rRNA gene or ITS regions, while shotgun metagenomics sequences all DNA present in a sample. Amplicon sequencing is a cost-effective method for profiling microbial composition, whereas shotgun metagenomics provides higher taxonomic resolution and enables functional analysis of bacteria, archaea, fungi, viruses, and other microorganisms in a single dataset.
BaseClear uses validated bioinformatics workflows and machine learning approaches to identify microbial biomarkers associated with health, disease, treatment response, or product performance. By combining statistical analysis with microbiome sequencing data and metadata, we help researchers uncover microbial signatures that can support patient stratification, product claims, and scientific discovery.
BaseClear performs the complete microbiome workflow in-house, from sample processing and sequencing to bioinformatics and reporting. This integrated approach, combined with laboratory automation, standardized quality controls, secure data management, and experienced scientists and bioinformaticians, ensures consistent and reliable results across projects.
BaseClear can analyze a wide range of microbiome sample types, including human, animal, environmental, food, feed, and industrial samples. Our workflows are optimized for different sample matrices and research objectives, enabling clients to investigate microbial diversity, functional potential, gene expression, and microbiome changes across diverse applications.
Identify genetic elements of concern, including AMR and toxin-related genes
Demonstrate absence of living production organisms using validated culture-based methods
Evaluate functional and toxigenic risks associated with microbial metabolites
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